General Information of MET (ID: META00379)
Name 4-Trimethylammoniobutanoic acid
Synonyms   Click to Show/Hide Synonyms of This Metabolite
3-Dehydroxycarnitine; 4-(N-Trimethylamino)butyrate; 4-(N-Trimethylamino)butyric acid; 4-(Trimethylamino)butanoate; 4-(Trimethylamino)butanoic acid; 4-Butyrobetaine; 4-N-Trimethylammonium butyrate; 4-Trimethylaminobutyrate; 4-Trimethylammoniobutanoate; 4-Trimethylammoniobutanoic acid; Actinine; Butyrobetaine; Deoxy-carnitine; Deoxycarnitine; gamma-Butyrobetain; gamma-Butyrobetaine
Source Aliphatic acyclic compounds
Structure Type   Fatty acids and conjugates  (Click to Show/Hide the Complete Structure Type Hierarchy)
Lipids and lipid-like molecules
Fatty Acyls
Fatty acids and conjugates
PubChem CID
725
HMDB ID
HMDB0001161
Formula
C7H15NO2
Structure
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3D MOL 2D MOL
  Click to Show/Hide the Molecular/Functional Data (External Links/Property/Function) of This Metabolite
KEGG ID
C01181
ChEBI ID
16244
FooDB ID
FDB024107
ChemSpider ID
705
Physicochemical Properties Molecular Weight 145.2 Topological Polar Surface Area 40.1
XlogP 0.8 Complexity 110
Heavy Atom Count 10 Rotatable Bond Count 3
Hydrogen Bond Donor Count N.A. Hydrogen Bond Acceptor Count 2
Function
4-Trimethylammoniobutanoic acid, also known as gamma-butyrobetaine (GBB) or 3-dehydroxycarnitine, is a highly water-soluble derivative of gamma-aminobutyric acid (GABA). It is also a precursor of L-carnitine. It is a substrate of gamma butyrobetaine hydroxylase/dioxygenase (also known as BBOX) which catalyzes the formation of L-carnitine from gamma-butyrobetaine, the last step in the L-carnitine biosynthesis pathway. Carnitine is essential for the transport of activated fatty acids across the mitochondrial membrane during mitochondrial beta-oxidation. Numerous disorders have been described that lead to disturbances in energy production and in intermediary metabolism which are characterized by the production and excretion of unusual acylcarnitines. A mutation in the gene coding for carnitine-acylcarnitine translocase, or the OCTN2 transporter aetiologically, causes a carnitine deficiency that results in poor intestinal absorption of dietary L-carnitine, impaired reabsorption by the kidney, and increased urinary loss. Determination of the qualitative pattern of acylcarnitines can be of diagnostic and therapeutic importance. The betaine structure of carnitine requires special analytical procedures for recording. The ionic nature of L-carnitine causes a high water solubility which decreases with increasing chain length of the ester group in the acylcarnitines. Therefore, the distribution of L-carnitine and acylcarnitines in various organs is defined by their function and their physicochemical properties as well. High-performance liquid chromatography (HPLC) permits screening for free and total carnitine, as well as complete quantitative acylcarnitine determination, including the long-chain acylcarnitine profile , 136(8), 1279-1291., Int J Mass Spectrom. 1999;188:39-52.).
Regulatory Network
Full List of Protein(s) Regulating This Metabolite
      Hydrolases (EC 3)
            Sulfatase sulf-1 (SULF1) Click to Show/Hide the Full List of Regulating Pair(s):   1 Pair(s)
               Detailed Information Protein   Info click to show the details of this protein
               Regulating Pair Experim Info click to show the details of experiment for validating this pair [1]
                      Introduced Variation Knockdown (shRNA) of SULF1
                      Induced Change 4-Trimethylammoniobutanoic acid concentration: decrease (FC = 0.60 / 0.61)
                      Summary Introduced Variation         Induced Change 
                      Disease Status Ovarian cancer [ICD-11: 2C73]
                      Details It is reported that knockdown of SULF1 leads to the decrease of 4-trimethylammoniobutanoic acid levels compared with control group.
      Oxidoreductases (EC 1)
            Formyltetrahydrofolate dehydrogenase (ALDH1L2) Click to Show/Hide the Full List of Regulating Pair(s):   1 Pair(s)
               Detailed Information Protein   Info click to show the details of this protein
               Regulating Pair Experim Info click to show the details of experiment for validating this pair [2]
                      Introduced Variation Mutation of ALDH1L2
                      Induced Change 4-Trimethylammoniobutanoic acid concentration: increase (FC = 4.76)
                      Summary Introduced Variation         Induced Change 
                      Disease Status Genetic disorders of keratinisation [ICD-11: EC20]
                      Details It is reported that mutation (patients) of ALDH1L2 leads to the increase of 4-trimethylammoniobutanoic acid levels compared with control group.
References
1 Erratum to: Loss of HSulf-1 promotes altered lipid metabolism in ovarian cancer. Cancer Metab. 2014 Nov 4;2:24.
2 Deleterious mutations in ALDH1L2 suggest a novel cause for neuro-ichthyotic syndrome. NPJ Genom Med. 2019 Jul 23;4:17.

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