General Information of MET (ID: META00468)
Name N(6)-Methyllysine
Synonyms   Click to Show/Hide Synonyms of This Metabolite
(2S)-2-Amino-6-(methylamino)hexanoate; (2S)-2-Amino-6-(methylamino)hexanoic acid; (S)-2-Amino-6-methylaminohexanoate; (S)-2-Amino-6-methylaminohexanoic acid; Epsilon-N-Methyllysine; MeLys; N(6)-Methyl-L-lysine; N(6)-Methyllysine; N(epsilon)-Methyl-L-lysine; N(epsilon)-Monomethyl-lysine; N(zeta)-Methyllysine; N-Epsilon-Methyllysine; N-Methyl-L-lysine; N-Methyl-lysine; N6-Methyl-L-lysine; epsilon-Methyllysine; epsilon-N-Methyllysine hydrochloride, (L-lys)-isomer; epsilon-N-Methyllysine, (DL-lys)-isomer
Source Endogenous;Food
Structure Type   Amino acids, peptides, and analogues  (Click to Show/Hide the Complete Structure Type Hierarchy)
Organic acids and derivatives
Carboxylic acids and derivatives
Amino acids, peptides, and analogues
PubChem CID
164795
HMDB ID
HMDB0002038
Formula
C7H16N2O2
Structure
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3D MOL 2D MOL
  Click to Show/Hide the Molecular/Functional Data (External Links/Property/Function) of This Metabolite
KEGG ID
C02728
DrugBank ID
DB01714
ChEBI ID
17604
FooDB ID
FDB022812
ChemSpider ID
144469
Physicochemical Properties Molecular Weight 160.21 Topological Polar Surface Area 75.4
XlogP -2.5 Complexity 117
Heavy Atom Count 11 Rotatable Bond Count 6
Hydrogen Bond Donor Count 3 Hydrogen Bond Acceptor Count 4
Function
N(6)-Methyllysine is a naturally occurring amino acid found in human biofluids. N-monomethyl-lysine is generated by metabolic transmethylation of endogenous lysine. Lysine methylation displays the highest degree of complexity among known covalent histone modifications, with each site of methylation regulating the association of different effector molecules. The versatility of lysine methylation marks is perhaps best exemplified by modifications implicated in transcriptional regulation as well as being required for double-strand break repair in several organisms. Identification of the numerous biological functions encoded by histone lysine methylation is a major area of research interest, as these mechanisms are intimately associated with cellular senescence, genomic instability, and leukemogenesis. While multiple sites of lysine methylation have been linked with gene activation, each modification is distributed to unique positions across the active gene.
Regulatory Network
Full List of Protein(s) Regulating This Metabolite
      Pore-forming PNC peptide (PNC)
            Cellular tumor antigen p53 (TP53) Click to Show/Hide the Full List of Regulating Pair(s):   1 Pair(s)
               Detailed Information Protein   Info click to show the details of this protein
               Regulating Pair Experim Info click to show the details of experiment for validating this pair [1]
                      Introduced Variation Knockout of TP53
                      Induced Change N(6)-Methyllysine concentration: increase (Log2 FC=1.29)
                      Summary Introduced Variation         Induced Change 
                      Disease Status Colon cancer [ICD-11: 2B90]
                      Details It is reported that knockout of TP53 leads to the increase of N(6)-methyllysine levels compared with control group.
References
1 Integrative omics analysis of p53-dependent regulation of metabolism. FEBS Lett. 2018 Feb;592(3):380-393.

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