General Information of MET (ID: META00289)
Name L-Arabinose
Synonyms   Click to Show/Hide Synonyms of This Metabolite
Arabinopyranose; Arabinose; L-Arabinopyranose; L-Arabinose; Pectinose; beta-L-Arabinopyranose; beta-L-Arabinose
Source Endogenous;Drug;Escherichia Coli Metabolite;Yeast Metabolite;Food;TCM Ingredients;Plant Metabolite; Microbial
Structure Type   Carbohydrates and carbohydrate conjugates  (Click to Show/Hide the Complete Structure Type Hierarchy)
Organic oxygen compounds
Organooxygen compounds
Carbohydrates and carbohydrate conjugates
PubChem CID
439764
HMDB ID
HMDB0000646
Formula
C5H10O5
Structure
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3D MOL 2D MOL
  Click to Show/Hide the Molecular/Functional Data (External Links/Property/Function) of This Metabolite
KEGG ID
C02479
ChEBI ID
40886
FooDB ID
FDB012306
ChemSpider ID
388821
Physicochemical Properties Molecular Weight 150.13 Topological Polar Surface Area 90.2
XlogP -2.5 Complexity 117
Heavy Atom Count 10 Rotatable Bond Count N.A.
Hydrogen Bond Donor Count 4 Hydrogen Bond Acceptor Count 5
Function
L-Arabinose (CAS: 5328-37-0) is a pentose with a sweet taste and one of the most abundant components released by complete hydrolysis of non-starch polysaccharides (NSP) of vegetable origin. However, NSPs are complicated compounds from the point of view of both physical structure and chemical composition, and they include cellulose, hemicellulose, pectin, and oligosaccharides. It is well-recognized that NSPs are resistant to the digestive enzymes and pass to the hind-gut where microbial degradation takes place. When L-arabinose is ingested in a digestible form, it is absorbed from the intestinal tract at a lower rate than glucose. A portion of the ingested L-arabinose is excreted in the urine. Although widely present in nature, L-arabinose is rarely used, and its physiological effects in vivo have received little attention. L-Arabinose selectively inhibits intestinal sucrase activity in a non-competitive manner and suppresses the plasma glucose increase due to sucrose ingestion. Because the intestinal absorption of sucrose is inhibited in the presence of L-arabinose, the absorption of sucrose should be reduced by arabinose ingestion. Most of the studies reported so far on the absorption and utilization of L-arabinose relate to omnivore animal species other than humans. In a rare case of two autistic brothers that were not associated with any known metabolic disease, it was found the median value for their urine samples was 179 umol/mmol creatinine of L-arabinose, nearly six times greater than normal children. L-Arabinose is found to be associated with ribose-5-phosphate isomerase deficiency, which is an inborn error of metabolism. L-Arabinose is also a microbial metabolite found in Mycobacterium.
Regulatory Network
Full List of Protein(s) Regulating This Metabolite
      Lyases (EC 4)
            Cystathionine gamma-lyase (CTH) Click to Show/Hide the Full List of Regulating Pair(s):   1 Pair(s)
               Detailed Information Protein   Info click to show the details of this protein
               Regulating Pair Experim Info click to show the details of experiment for validating this pair [1]
                      Introduced Variation Knockout of Cth
                      Induced Change L-Arabinose concentration: decrease (FC = 0.48)
                      Summary Introduced Variation         Induced Change 
                      Disease Status Organic acid disorderss [ICD-11: 5C50]
                      Details It is reported that knockout of Cth leads to the decrease of L-Arabinose levels compared with control group.
References
1 Hydrogen Sulfide Is a Regulator of Hemoglobin Oxygen-Carrying Capacity via Controlling 2,3-BPG Production in Erythrocytes. Oxid Med Cell Longev. 2021 Feb 13;2021:8877691.

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